![]() ![]() NADPH might have residue name NAP, NAD or something like that, since PDB files have 3-letter residue names. With menu: Select… Residue… allows selecting by name (all the residue names present will be listed in the menu). How do you find out the residue name or number? One way is by hovering the mouse over some atom or bond in the residue, which will pop up a balloon that shows atom name, residue name, and residue number. … would select residue named NAD, or residue 254 in chain A respectively. With command: specify residue name or number, e.g. With mouse: Ctrl-click on some atom selects it, and then keyboard up arrow will promote the selection to the whole residue. For example, you can select by residue name and/or number, or with the mouse in the Chimera window. The "ligand" detection uses automatic rules and won't always get what you expect, but there are many other ways to select a specific residue. > I have selected the ligand because that is what my research mentor and I are interested in (the active site and ligand binding etc.) however, when i select "ligand" it also high lights other molecules around the protein, more around the surface, like butanol - how can i just select the ligand NADPH and not have to select the other small molecule ligands that are not part of the active site of the protein? can i do that? ![]() ![]() On Sep 18, 2013, at 8:53 PM, Serina Doolittle wrote: Previous message: enclosing chain in surface.selecting a specific residue Elaine Meng meng at ![]()
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